The flight deck operation process and support time of carrier-based aircraft have an important impact on the overall dispatch capability. Aiming at the optimization of the flight deck operation process of carrier-based aircraft, a method of using heuristic algorithm combined with 3D modeling and virtual simulation is proposed, and the heuristic algorithm considering multiple constraints is used to solve the time-series scheme of flight deck operation for carrier-based aircraft and shorten the surface of the carrier-based aircraft. The support process is time-consuming. Based on the virtual reality platform, the carrier-based aircraft support process simulation environment is built, and the high-precision component 3D modeling of the carrier-based aircraft flight deck operation process is carried out, and the fine-grained visual simulation of the carrier-based aircraft flight deck operation process is carried out. Deduction and space interference detection are used to verify the carrier-based aircraft flight deck operation sequence scheme solved by manual scheduling or algorithm, evaluate its rationality and feasibility, and verify that the evaluation results can support the further optimization of the carrier-based aircraft flight deck operation timing scheme.